Publications Use Cases Deliverables Publications Search for All publications Abstract (0) Article in journal (13) Book / Monograph (0) Chapter in a book (0) Oral presentation (2) Other (0) Poster presentation (7) Publication in Conference Proceedings / Workshop (2) Report (0) Thesis / disertation (0) Webinar Slides (21) Modeling the extracellular matrix in cell migration and morphogenesis: A guide for the curious biologist 30/03/2024 | read more Drug-Target identification in COVID-19 disease mechanisms using computational systems biology approaches 01/03/2024 | read more Course slides: Computational layers (Introduction to HPC for Life Scientists 2023) 20/02/2024 | read more PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks 08/11/2023 | read more Webinar slides: Multiscale model of the different modes of cancer cell invasion: a PhysiBoSS application 07/11/2023 | read more Webinar slides: Poster winners, PerMedCoE Summer School 2023: 1) Towards Tailored Cancer Therapies, 2) Computational modelling of High Grade Serous Ovarian Cancer, 3) Dissecting cellular communication in the tumour microenvironment 05/10/2023 | read more Webinar slides: Digital twins for drug repurposing by integrating mathematical modelling and machine learning: bridging the gap between in silico and real-world data 13/09/2023 | read more Lessons learned from a performance analysis and optimization of a multiscale cellular simulation 06/07/2023 | read more Webinar slides: Utilizing GPUs in scientific algorithms 15/06/2023 | read more Multiscale model of the different modes of cancer cell invasion 06/06/2023 | read more Webinar slides: Data protection and privacy preservation in software development 11/05/2023 | read more PerMedCoe presents poster at EuroHPC Summit 2023 22/03/2023 | read more Webinar slides: Supercomputer-based modelling and simulation for advanced biomedical applications 10/03/2023 | read more Webinar slides: Interrogating the effect of enzyme kinetics on metabolism using differentiable constraint-based models 23/02/2023 | read more Webinar slides: Data-driven modelling of intercellular interactions in the tumour microenvironment 25/01/2023 | read more Webinar slides: Introducing PerMedCoE Building Blocks and Workflows to streamline biological analysis pipelines 22/12/2022 | read more Webinar slides: Croupier, an user-centric meta-orchestrator for cross-platform workflow delivery and execution 16/11/2022 | read more Interrogating the effect of enzyme kinetics on metabolism using differentiable constraint-based models 03/11/2022 | read more Webinar slides: Data protection and security aspects of running simulations on personal data with HPC 24/10/2022 | read more Modeling signaling pathways in biology with MaBoSS: from one single cell to a dynamic population of heterogeneous interacting cells 06/10/2022 | read more Implementation of cellular transport mechanisms within a multiscale simulation framework 19/09/2022 | read more Webinar slides: HPC boosts mathematical models’ promises of personalised medicine 22/06/2022 | read more Webinar slides: The PerMedCoE competency framework to guide training and career development 09/06/2022 | read more Webinar slides: Computer-assisted functional precision medicine in cancer 01/06/2022 | read more Webinar slides: Mathematical modelling as knowledge mapping in PhysiCell: a guided tour 27/04/2022 | read more HPC workflow compartmentalises a multiscale simulation aimed at the personalisation of COVID-19 treatments and facilitates its scalability 05/04/2022 | read more Optimizing dosage-specific treatments in a multi-scale model of a tumor growth 07/03/2022 | read more Webinar slides: Identifying tumor cells at the single cell level through machine learning 03/03/2022 | read more UPMaBoSS: A Novel Framework for Dynamic Cell Population Modeling 02/03/2022 | read more Patient-specific Boolean models of signalling networks guide personalised treatments 15/02/2022 | read more Webinar slides: Logic modelling of signalling networks – CellNOpt and CARNIVAL 21/01/2022 | read more Webinar slides: Biomedicine, supercomputers and simulations: in silico experiments and its applications in cancer research 15/12/2021 | read more Webinar slides: Introduction to qualitative modelling with MaBoSS 19/11/2021 | read more COBREXA.jl: constraint-based reconstruction and exascale analysis 16/11/2021 | read more WebMaBoSS: A Web Interface for Simulating Boolean Models Stochastically 15/11/2021 | read more Webinar slides: Analysis of huge metabolic models with COBREXA.jl 21/10/2021 | read more COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms 19/10/2021 | read more Systems Biology at the giga-scale: large multi-scale models of complex, heterogeneous multicellular systems 25/09/2021 | read more Webinar slides: Exascale-ready cell-level simulations for EU Personalised Medicine 17/09/2021 | read more BioFVM-X: an MPI+OpenMP 3-D simulator for biological systems 13/09/2021 | read more PerMedCoE: A roadmap to scalability in Personalized Medicine 30/07/2021 | read more INTERFACING SYSTEMS BIOLOGY STANDARDS WITH THE JULIA ECOSYSTEM 28/07/2021 | read more The PerMedCoE competency framework to guide the training programme 26/07/2021 | read more COBREXA.JL: CONSTRAINT-BASED RECONSTRUCTION & EXASCALE ANALYSIS 08/07/2021 | read more HPC-enabled multiscale simulation to uncover mechanistic insights in the COVID-19 infection 23/03/2021 | read more
Modeling the extracellular matrix in cell migration and morphogenesis: A guide for the curious biologist 30/03/2024 | read more
Drug-Target identification in COVID-19 disease mechanisms using computational systems biology approaches 01/03/2024 | read more
Course slides: Computational layers (Introduction to HPC for Life Scientists 2023) 20/02/2024 | read more
PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks 08/11/2023 | read more
Webinar slides: Multiscale model of the different modes of cancer cell invasion: a PhysiBoSS application 07/11/2023 | read more
Webinar slides: Poster winners, PerMedCoE Summer School 2023: 1) Towards Tailored Cancer Therapies, 2) Computational modelling of High Grade Serous Ovarian Cancer, 3) Dissecting cellular communication in the tumour microenvironment 05/10/2023 | read more
Webinar slides: Digital twins for drug repurposing by integrating mathematical modelling and machine learning: bridging the gap between in silico and real-world data 13/09/2023 | read more
Lessons learned from a performance analysis and optimization of a multiscale cellular simulation 06/07/2023 | read more
Webinar slides: Data protection and privacy preservation in software development 11/05/2023 | read more
Webinar slides: Supercomputer-based modelling and simulation for advanced biomedical applications 10/03/2023 | read more
Webinar slides: Interrogating the effect of enzyme kinetics on metabolism using differentiable constraint-based models 23/02/2023 | read more
Webinar slides: Data-driven modelling of intercellular interactions in the tumour microenvironment 25/01/2023 | read more
Webinar slides: Introducing PerMedCoE Building Blocks and Workflows to streamline biological analysis pipelines 22/12/2022 | read more
Webinar slides: Croupier, an user-centric meta-orchestrator for cross-platform workflow delivery and execution 16/11/2022 | read more
Interrogating the effect of enzyme kinetics on metabolism using differentiable constraint-based models 03/11/2022 | read more
Webinar slides: Data protection and security aspects of running simulations on personal data with HPC 24/10/2022 | read more
Modeling signaling pathways in biology with MaBoSS: from one single cell to a dynamic population of heterogeneous interacting cells 06/10/2022 | read more
Implementation of cellular transport mechanisms within a multiscale simulation framework 19/09/2022 | read more
Webinar slides: HPC boosts mathematical models’ promises of personalised medicine 22/06/2022 | read more
Webinar slides: The PerMedCoE competency framework to guide training and career development 09/06/2022 | read more
Webinar slides: Mathematical modelling as knowledge mapping in PhysiCell: a guided tour 27/04/2022 | read more
HPC workflow compartmentalises a multiscale simulation aimed at the personalisation of COVID-19 treatments and facilitates its scalability 05/04/2022 | read more
Optimizing dosage-specific treatments in a multi-scale model of a tumor growth 07/03/2022 | read more
Webinar slides: Identifying tumor cells at the single cell level through machine learning 03/03/2022 | read more
Patient-specific Boolean models of signalling networks guide personalised treatments 15/02/2022 | read more
Webinar slides: Logic modelling of signalling networks – CellNOpt and CARNIVAL 21/01/2022 | read more
Webinar slides: Biomedicine, supercomputers and simulations: in silico experiments and its applications in cancer research 15/12/2021 | read more
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms 19/10/2021 | read more
Systems Biology at the giga-scale: large multi-scale models of complex, heterogeneous multicellular systems 25/09/2021 | read more
Webinar slides: Exascale-ready cell-level simulations for EU Personalised Medicine 17/09/2021 | read more
HPC-enabled multiscale simulation to uncover mechanistic insights in the COVID-19 infection 23/03/2021 | read more
