Summer School

25-30 June 2023

From pathway modelling tools to cell-level simulations


The HPC/Exascale Centre of Excellence
for Personalised Medicine in Europe

PerMedCoE use cases

PerMedCoE works on a comprehensive set of use cases to drive the development of cell-level simulations.

PerMedCoE news

Read about PerMedCoE’s latest news and updates.

Latest news

Drug synergies workflow successfully run on MareNostrum 4

Drug synergies workflow successfully run on MareNostrum 4

PerMedCoE partners at Institut Curie and the University of Heidelberg developed a workflow that facilitates the prediction of personalised targeted drug combinations for cancer treatment, using CARNIVAL (Trairathphisan et al. 2021), PROFILE (Béal et al. 2019) and MaBoSS (Stoll et al. 2012, 2017) software. As a proof of concept, the workflow has successfully been run on the BSC MareNostrum 4 supercomputer.

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Trainings, webinars & courses

MaBoSS: a tool for modelling biological systems

Modelling biological systems can be very useful to identify which cellular mechanisms are deregulated in diseases and why, to anticipate the effect of drugs, and to optimise the efficacy of treatments, among other purposes. This section includes training materials and...

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Optimising cell-level
simulation software
to run in pre-exascale

Use cases driving the
implementation of
PerMed solutions in

Integrating PerMedCoE

Integrating PerMed
communities into
the new European


Training biomedical
professionals in the
use of HPC/Exascale
PerMed tools


Building the basis
for the sustainability
of the PerMedCoE