Latest news
Drug synergies workflow successfully run on MareNostrum 4
PerMedCoE partners at Institut Curie and the University of Heidelberg developed a workflow that facilitates the prediction of personalised targeted drug combinations for cancer treatment, using CARNIVAL (Trairathphisan et al. 2021), PROFILE (Béal et al. 2019) and MaBoSS (Stoll et al. 2012, 2017) software. As a proof of concept, the workflow has successfully been run on the BSC MareNostrum 4 supercomputer.
Forthcoming webinars & courses
Our Autumn agenda of courses cover topics such as data protection and security, cobrexa.ji and croupier.
Community-driven benchmarking hackathon
Researchers from European and North American universities will gather at the headquarters of the Barcelona Supercomputing Centre to compare tools simulating agent-based models used in biomedical projects.
Trainings, webinars & courses
Webinar: Data protection and security aspects of running simulations on personal data with HPC
👩🏾💻 11 October 2022 – Data protection and security aspects of running simulations on personal data with HPC
Webinar: Croupier, an user-centric meta-orchestrator for cross-platform workflow delivery and execution
👩🏾💻 15 November 2022 – Croupier, an user-centric meta-orchestrator for cross-platform workflow delivery and execution
Virtual course: Systematising complex and combined metabolic analyses with COBREXA.jl
15 November 2022. This course introduces COBREXA.jl, a toolkit for working with large constraint-based metabolic models
Optimising cell-level
simulation software
to run in pre-exascale
platforms
Use cases driving the
implementation of
PerMed solutions in
HPC/Exascale
environment
Integrating PerMed
communities into
the new European
HPC/Exascale
ecosystem
Training biomedical
professionals in the
use of HPC/Exascale
PerMed tools
Building the basis
for the sustainability
of the PerMedCoE
Do you want to improve your data protection and security knowledge? Join us 👇
📅11th Oct, 15 CEST
#Data protection and security aspects of running simulations on personal data with #hpc with Sarah Peter, from @uni_lu & Adrian Thorogood
📝Register http://ow.ly/qSp850KUigy
🔬@PerMedCoE Summer School is coming. Get ready!
🧐Primarily intended for PhD students and early postdoctoral researchers in #computationalbiology, #systemsbiology or #lifesciences interested in cell-level #simulations.
Register! https://bit.ly/3BxE3jF
All within @PerMedCoE's efforts to bring together tools for cell-level simulations and personalised medicine applications - https://permedcoe.eu/community-driven-benchmarking-hackathon/ https://twitter.com/Alfons_Valencia/status/1573275167484219395
Looking forward to the summary of the two days hands on workshop organised by @BSC_CNS @ArnauMontagud
12 researchers & 6 different tools simulating agent-based models in biomedical projects using #marenostrum
+ A nice present form our @PhysiCell friends and collaborators.