PerMedCoE

The HPC/Exascale Centre of Excellence
for Personalised Medicine in Europe

PerMedCoE use cases

PerMedCoE works on a comprehensive set of use cases to drive the development of cell-level simulations.

PerMedCoE news

Read about PerMedCoE’s latest news and updates.

Latest news

Trainings, webinars & courses

Tutorials on CARNIVAL

transcriptutorial: this is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL. From transcriptomics to mechanistic models of signalling: this is the Google Colab notebook of the virtual course that ran...

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Materials from the PerMedCoE Summer School

The PerMedCoE summer school: from pathway modelling tools to cell-level simulations, ran in June 2023 and the materials were made freely available afterwards, including tutorials on PerMedCoE tools, workflows and introduction to HPC.

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Discover PerMedCoE ZENODO Community

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Optimising cell-level
simulation software
to run in pre-exascale
platforms

Use cases driving the
implementation of
PerMed solutions in
HPC/Exascale
environment

Integrating PerMedCoE

Integrating PerMed
communities into
the new European
HPC/Exascale
ecosystem

Training

Training biomedical
professionals in the
use of HPC/Exascale
PerMed tools

Building

Building the basis
for the sustainability
of the PerMedCoE