transcriptutorial: this is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL.

From transcriptomics to mechanistic models of signalling: this is the Google Colab notebook of the virtual course that ran in April 2023. You will learn how to process differential gene expression data to estimate transcription factor activities with Decoupler, obtain and process PKNs with OmniPath and pypath, and use CARNIVAL through CORNETO to infer signalling networks that explain the activity patterns.